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https://github.com/NixOS/nixpkgs
synced 2024-10-19 03:47:13 -04:00
428045f39b
Without the change build fails on -fno-common toolchains like upstream
gcc-10 as:
$ nix build -L --impure --expr 'with import ./. {}; bwa.overrideAttrs (oa: { NIX_CFLAGS_COMPILE = (oa.NIX_CFLAGS_COMPILE or "") + "-fno-common"; })'
...
ld: ./libbwa.a(rope.o):/build/bwa-0.7.17/rle.h:33:
multiple definition of `rle_auxtab'; ./libbwa.a(bwtindex.o):/build/bwa-0.7.17/rle.h:33: first defined here
ld: ./libbwa.a(rle.o):/build/bwa-0.7.17/rle.h:33:
multiple definition of `rle_auxtab'; ./libbwa.a(bwtindex.o):/build/bwa-0.7.17/rle.h:33: first defined here
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| .. | ||
| angsd | ||
| ants | ||
| aragorn | ||
| bayescan | ||
| bcftools | ||
| bedops | ||
| bedtools | ||
| bftools | ||
| blast | ||
| bowtie | ||
| bowtie2 | ||
| bppsuite | ||
| bwa | ||
| cd-hit | ||
| clustal-omega | ||
| cmtk | ||
| conglomerate | ||
| dcm2niix | ||
| deeptools | ||
| delly | ||
| diamond | ||
| ecopcr | ||
| eggnog-mapper | ||
| emboss | ||
| est-sfs | ||
| exonerate | ||
| EZminc | ||
| fastp | ||
| febio-studio | ||
| flywheel-cli | ||
| freebayes | ||
| genmap | ||
| hisat2 | ||
| hmmer | ||
| igv | ||
| inormalize | ||
| itsx | ||
| iv | ||
| kallisto | ||
| kent | ||
| kssd | ||
| last | ||
| MACS2 | ||
| macse | ||
| manta | ||
| megahit | ||
| meme-suite | ||
| messer-slim | ||
| migrate | ||
| minc-tools | ||
| minc-widgets | ||
| minia | ||
| minimap2 | ||
| mni_autoreg | ||
| mosdepth | ||
| mrbayes | ||
| mrtrix | ||
| muscle | ||
| N3 | ||
| neuron | ||
| niftyreg | ||
| niftyseg | ||
| obitools | ||
| octopus | ||
| paml | ||
| picard-tools | ||
| platypus | ||
| plink-ng | ||
| poretools | ||
| prodigal | ||
| quast | ||
| raxml | ||
| repseek | ||
| sambamba | ||
| samblaster | ||
| samtools | ||
| seaview | ||
| snpeff | ||
| somatic-sniper | ||
| sortmerna | ||
| spades | ||
| stacks | ||
| star | ||
| strelka | ||
| subread | ||
| sumatools | ||
| svaba | ||
| tebreak | ||
| trimal | ||
| truvari | ||
| varscan | ||
| vcftools | ||
| whisper | ||
| xenomapper | ||